Swiss-Czech Proteomics Server

Proteomics Database of Streptomyces coelicolor

How to Create Links to SWICZ

General syntax for linking to the Streptomyces database is
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=XXXX&n1=XXXX&n2=XXXX&n3=XXXX&n4=XXXX"

Allowed Values for the variables
query n1 n2 n3 n4
spotno number <3, 9701>      
scono number <SCO0179, SCO7510>      
prot string (substring of a protein name)      
gene string (substring of a gene name)      
mwpi lower Mw <14, 100> higher Mw <14, 100> lower pI <3.06, 6.95> higher pI  <3.06, 6.95>
cluster developmental cluster # <1, 20>      
func protein function group # <1, 11>
(see next table)
     
funcC protein function group {C,E,G,H,J,K,L,O,P,R,S,D,F,M,Q,N,T,I}
(See next table)
     
funcK protein KEGG function group # <101, 2502>      
funcKm protein KEGG main function group # <1, 25>      
Values of "n1" for different protein function groups
 n1  n1 function group
1 C Energy production and conversion
2 E Amino acid transport and metabolism
3 G Carbohydrate transport and metabolism
4 H Coenzyme metabolism
5 J Translation, ribosomal structure and biogenesis
6 K Transcription
7 L DNA replication, recombination and repair
8 O Posttranslational modification, protein turnover, chaperones
9 P Inorganic ion transport and metabolism
10 R General function prediction only
11 S Function unknown
12 D Cell division and chromosome partitioning
13 F Nucleotide transport and metabolism
14 M Cell envelope biogenesis, outer membrane
15 Q Secondary metabolites biosynthesis, transport and catabolism
16 N Cell motility and secretion
17 T Signal transduction mechanisms
18 I Lipid metabolism

Examples:

To get proteins containing substring "eno" in its name from the Streptomyces database, create link:
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=prot&n1=eno"
Test

To get Spot Numbers with particular SCO number "SCO4808" from the Streptomyces database, create link:
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=scono&n1=SCO4808"
Test

To get proteins in the Mw range <50, 60> and pI range <4, 4.5> from the Streptomyces database, create link:
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=mwpi&n1=50&n2=60&n3=4&n4=4.5"
Test

To get proteins involved in translation, ribosomal structure and biogenesis from the Streptomyces database, create link:
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=func&n1=5"
Test