SWICZ

How to Create Links to SWICZ

Streptomyces coelicolor database

General syntax for linking to the Streptomyces database is
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=XXXX&n1=XXXX&n2=XXXX&n3=XXXX&n4=XXXX"

Values allowed for the variables are listed in the following table:

query n1 n2 n3 n4
spotno number <3, 9701>      
prot string (substring of a protein name)      
gene string (substring of a gene name)      
mwpi lower Mw <14, 100> higher Mw <14, 100> lower pI <3.06, 6.95> higher pI  <3.06, 6.95>
cluster developmental cluster # <1, 20>      
func protein function group # <1, 11>
(see next table)
     

Values of "n1" for different protein function groups

 n1 function group
1 Energy production and conversion
2 Amino acid transport and metabolism
3 Carbohydrate transport and metabolism
4 Coenzyme metabolism
5 Translation, ribosomal structure and biogenesis
6 Transcription
7 DNA replication, recombination and repair
8 Posttranslational modification, protein turnover, chaperones
9 Inorganic ion transport and metabolism
10 General function prediction only
11 Function unknown

Examples:

To get proteins containing substring "eno" in its name from the Streptomyces database, create link:
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=prot&n1=eno"
Test

To get proteins in the Mw range <50, 60> and pI range <4, 4.5> from the Streptomyces database, create link:
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=mwpi&n1=50&n2=60&n3=4&n4=4.5"
Test

To get proteins involved in translation, ribosomal structure and biogenesis from the Streptomyces database, create link:
"http://proteom.biomed.cas.cz/queryswicz.php?dbase=strepto&query=func&n1=5"
Test

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